STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpE-3acyl-CoA synthetase. (538 aa)    
Predicted Functional Partners:
tugA
Uncharacterized protein.
  
 0.936
ajuC
Polyketide synthase.
 
 0.896
AKT41249.1
Polyketide synthase.
 
 0.892
ajuF
Polyketide synthase.
 
 0.883
cndA
Uncharacterized protein.
  
 0.881
ajuE
Polyketide synthase.
  
 0.881
ajuG
Uncharacterized protein.
  
 0.849
ajuL
Uncharacterized protein.
  
 0.775
croB
Polyketide synthase.
 
 0.764
AKT40700.1
Polyketide synthase.
 
 0.762
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.