Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT40623.1Uncharacterized protein. (768 aa)    
Predicted Functional Partners:
AKT38907.1
Uncharacterized protein.
 
  
 0.810
impJ
Protein ImpJ/VasE.
 
  
 0.807
AKT38901.1
Uncharacterized protein.
 
  
 0.796
AKT38889.1
Uncharacterized protein.
 
  
 0.793
AKT38890.1
Type VI secretion protein.
 
  
 0.793
AKT38905.1
Uncharacterized protein.
 
  
 0.786
AKT38902.1
Uncharacterized protein.
 
  
 0.784
AKT43387.1
Uncharacterized protein.
 
  
 0.784
AKT44096.1
Uncharacterized protein.
 
  
 0.784
evpB
Type VI secretion protein EvpB.
 
  
 0.782
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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