Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKT40838.1cAMP phosphodiesterase. (253 aa)    
Predicted Functional Partners:
AKT39569.1
Cyclic nucleotide-binding protein.
  
  
  0.975
AKT40891.1
Cyclic nucleotide-binding protein.
  
  
  0.968
AKT36452.1
Cyclic nucleotide-binding protein.
  
  
 0.964
AKT43340.1
cAMP phosphodiesterase.
  
  
 
0.910
AKT40231.1
Uncharacterized protein.
  
   
 0.677
AKT39452.1
Uncharacterized protein.
 
     0.636
AKT37460.1
Diguanylate cyclase.
   
 
 0.481
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.465
AKT36813.1
Uncharacterized protein.
 
 
 0.458
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.439
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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