Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT40888.1Biopolymer transporter. (273 aa)    
Predicted Functional Partners:
exbD-4
Biopolymer transporter ExbD.
 
 
 0.977
exbD-3
Biopolymer transporter ExbD.
 
 
 0.904
AKT41031.1
Uncharacterized protein.
 
 
 0.884
AKT40890.1
Uncharacterized protein.
  
 
 0.862
exbD-6
Biopolymer transporter ExbD.
 
 
 0.862
exbD
Biopolymer transporter ExbD.
 
 
 0.860
exbD-2
Biopolymer transporter ExbD.
 
 
 0.829
exbD-5
Biopolymer transporter ExbD.
 
 
 0.803
AKT39814.1
Membrane protein.
  
   
 0.728
AKT41963.1
Uncharacterized protein.
 
 
 0.716
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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