STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT40890.1Uncharacterized protein. (311 aa)    
Predicted Functional Partners:
exbD-4
Biopolymer transporter ExbD.
  
 
 0.877
AKT40888.1
Biopolymer transporter.
  
 
 0.872
AKT40891.1
Cyclic nucleotide-binding protein.
       0.539
truD
tRNA pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
       0.536
AKT39438.1
TonB-dependent receptor.
  
 
 0.487
AKT40092.1
Uncharacterized protein.
  
 
 0.487
AKT41034.1
TonB-dependent receptor.
  
 
 0.487
AKT41376.1
tonB family protein.
  
 
 0.487
AKT41963.1
Uncharacterized protein.
  
 
 0.487
AKT37636.1
Histidine kinase.
  
  
 0.479
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.