Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT40890.1Uncharacterized protein. (311 aa)    
Predicted Functional Partners:
exbD-4
Biopolymer transporter ExbD.
  
 
 0.869
AKT40888.1
Biopolymer transporter.
  
 
 0.862
AKT40891.1
Cyclic nucleotide-binding protein.
       0.539
truD
tRNA pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
       0.530
AKT37636.1
Histidine kinase.
  
  
 0.485
exbD-3
Biopolymer transporter ExbD.
  
 
 0.450
exbD
Biopolymer transporter ExbD.
  
 
 0.445
exbD-2
Biopolymer transporter ExbD.
  
 
 0.445
AKT40174.1
Adventurous gliding motility protein.
  
 
 0.445
tolR
TolR-like protein.
  
 
 0.445
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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