exbD-5 protein (Chondromyces crocatus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

exbD-5

Biopolymer transporter ExbD. (164 aa)

Predicted Functional Partners:

motA-4

0.941

AKT43508.1

0.895

tonB-2

0.885

motA

0.880

AKT41031.1

0.836

tonB-3

0.836

AKT40095.1

0.817

AKT40888.1

0.797

exbD-6

0.774

AKT43628.1

0.756

Your Current Organism:

Chondromyces crocatus

NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKT40095.1	AKT41031.1	CMC5_042480	CMC5_051890	Uncharacterized protein.	Uncharacterized protein.	0.888
AKT40095.1	AKT43628.1	CMC5_042480	CMC5_078630	Uncharacterized protein.	Uncharacterized protein.	0.597
AKT40095.1	exbD-5	CMC5_042480	CMC5_051880	Uncharacterized protein.	Biopolymer transporter ExbD.	0.817
AKT40095.1	exbD-6	CMC5_042480	CMC5_077390	Uncharacterized protein.	Biopolymer transporter ExbD.	0.860
AKT40095.1	tonB-2	CMC5_042480	CMC5_051910	Uncharacterized protein.	Biopolymer transporter TonB.	0.543
AKT40095.1	tonB-3	CMC5_042480	CMC5_078620	Uncharacterized protein.	Biopolymer transporter TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.602
AKT40888.1	AKT41031.1	CMC5_050450	CMC5_051890	Biopolymer transporter.	Uncharacterized protein.	0.885
AKT40888.1	AKT43628.1	CMC5_050450	CMC5_078630	Biopolymer transporter.	Uncharacterized protein.	0.608
AKT40888.1	exbD-5	CMC5_050450	CMC5_051880	Biopolymer transporter.	Biopolymer transporter ExbD.	0.797
AKT40888.1	exbD-6	CMC5_050450	CMC5_077390	Biopolymer transporter.	Biopolymer transporter ExbD.	0.858
AKT40888.1	tonB-2	CMC5_050450	CMC5_051910	Biopolymer transporter.	Biopolymer transporter TonB.	0.543
AKT40888.1	tonB-3	CMC5_050450	CMC5_078620	Biopolymer transporter.	Biopolymer transporter TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.543
AKT41031.1	AKT40095.1	CMC5_051890	CMC5_042480	Uncharacterized protein.	Uncharacterized protein.	0.888
AKT41031.1	AKT40888.1	CMC5_051890	CMC5_050450	Uncharacterized protein.	Biopolymer transporter.	0.885
AKT41031.1	AKT43508.1	CMC5_051890	CMC5_077400	Uncharacterized protein.	Transport protein, tolQ.	0.908
AKT41031.1	AKT43628.1	CMC5_051890	CMC5_078630	Uncharacterized protein.	Uncharacterized protein.	0.769
AKT41031.1	exbD-5	CMC5_051890	CMC5_051880	Uncharacterized protein.	Biopolymer transporter ExbD.	0.836
AKT41031.1	motA	CMC5_051890	CMC5_038310	Uncharacterized protein.	Flagellar motor protein MotA.	0.899
AKT41031.1	motA-4	CMC5_051890	CMC5_051900	Uncharacterized protein.	Flagellar motor protein MotA.	0.955
AKT41031.1	tonB-2	CMC5_051890	CMC5_051910	Uncharacterized protein.	Biopolymer transporter TonB.	0.868