Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKT40650.1 | AKT41025.1 | CMC5_048060 | CMC5_051830 | Uncharacterized protein. | Uncharacterized protein. | 0.856 |
AKT40650.1 | AKT41375.1 | CMC5_048060 | CMC5_055750 | Uncharacterized protein. | ATP-dependent helicase. | 0.640 |
AKT40650.1 | fusA-2 | CMC5_048060 | CMC5_022190 | Uncharacterized protein. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.720 |
AKT40650.1 | rph | CMC5_048060 | CMC5_007260 | Uncharacterized protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.661 |
AKT40650.1 | rpsA | CMC5_048060 | CMC5_068980 | Uncharacterized protein. | 30S ribosomal protein S1. | 0.900 |
AKT40650.1 | rpsD | CMC5_048060 | CMC5_002020 | Uncharacterized protein. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.976 |
AKT40650.1 | rpsE | CMC5_048060 | CMC5_007550 | Uncharacterized protein. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.972 |
AKT40650.1 | rpsK | CMC5_048060 | CMC5_007630 | Uncharacterized protein. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.975 |
AKT40650.1 | rpsQ | CMC5_048060 | CMC5_007470 | Uncharacterized protein. | Uncharacterized protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.938 |
AKT40650.1 | rtcA | CMC5_048060 | CMC5_038530 | Uncharacterized protein. | RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.797 |
AKT41025.1 | AKT40650.1 | CMC5_051830 | CMC5_048060 | Uncharacterized protein. | Uncharacterized protein. | 0.856 |
AKT41025.1 | AKT41375.1 | CMC5_051830 | CMC5_055750 | Uncharacterized protein. | ATP-dependent helicase. | 0.898 |
AKT41025.1 | rph | CMC5_051830 | CMC5_007260 | Uncharacterized protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.991 |
AKT41025.1 | rpsA | CMC5_051830 | CMC5_068980 | Uncharacterized protein. | 30S ribosomal protein S1. | 0.856 |
AKT41025.1 | rpsD | CMC5_051830 | CMC5_002020 | Uncharacterized protein. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.965 |
AKT41025.1 | rpsE | CMC5_051830 | CMC5_007550 | Uncharacterized protein. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.818 |
AKT41025.1 | rpsK | CMC5_051830 | CMC5_007630 | Uncharacterized protein. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.956 |
AKT41025.1 | rpsQ | CMC5_051830 | CMC5_007470 | Uncharacterized protein. | Uncharacterized protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.836 |
AKT41025.1 | rtcA | CMC5_051830 | CMC5_038530 | Uncharacterized protein. | RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.980 |
AKT41375.1 | AKT40650.1 | CMC5_055750 | CMC5_048060 | ATP-dependent helicase. | Uncharacterized protein. | 0.640 |
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