Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKT40814.1 | AKT40815.1 | CMC5_049700 | CMC5_049710 | Saccharopine dehydrogenase. | Uncharacterized protein; Belongs to the amidase family. | 0.787 |
AKT40814.1 | AKT40817.1 | CMC5_049700 | CMC5_049720 | Saccharopine dehydrogenase. | Uncharacterized protein. | 0.572 |
AKT40814.1 | mutS-4 | CMC5_049700 | CMC5_084860 | Saccharopine dehydrogenase. | DNA mismatch repair protein MutS. | 0.773 |
AKT40815.1 | AKT40814.1 | CMC5_049710 | CMC5_049700 | Uncharacterized protein; Belongs to the amidase family. | Saccharopine dehydrogenase. | 0.787 |
AKT40815.1 | AKT40817.1 | CMC5_049710 | CMC5_049720 | Uncharacterized protein; Belongs to the amidase family. | Uncharacterized protein. | 0.572 |
AKT40815.1 | mutS-4 | CMC5_049710 | CMC5_084860 | Uncharacterized protein; Belongs to the amidase family. | DNA mismatch repair protein MutS. | 0.789 |
AKT40817.1 | AKT40814.1 | CMC5_049720 | CMC5_049700 | Uncharacterized protein. | Saccharopine dehydrogenase. | 0.572 |
AKT40817.1 | AKT40815.1 | CMC5_049720 | CMC5_049710 | Uncharacterized protein. | Uncharacterized protein; Belongs to the amidase family. | 0.572 |
AKT40817.1 | mutS-4 | CMC5_049720 | CMC5_084860 | Uncharacterized protein. | DNA mismatch repair protein MutS. | 0.572 |
mutS-4 | AKT40814.1 | CMC5_084860 | CMC5_049700 | DNA mismatch repair protein MutS. | Saccharopine dehydrogenase. | 0.773 |
mutS-4 | AKT40815.1 | CMC5_084860 | CMC5_049710 | DNA mismatch repair protein MutS. | Uncharacterized protein; Belongs to the amidase family. | 0.789 |
mutS-4 | AKT40817.1 | CMC5_084860 | CMC5_049720 | DNA mismatch repair protein MutS. | Uncharacterized protein. | 0.572 |
mutS-4 | polA | CMC5_084860 | CMC5_003550 | DNA mismatch repair protein MutS. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.469 |
mutS-4 | rplT | CMC5_084860 | CMC5_075040 | DNA mismatch repair protein MutS. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.436 |
mutS-4 | rpmB | CMC5_084860 | CMC5_039860 | DNA mismatch repair protein MutS. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.442 |
mutS-4 | rpsD | CMC5_084860 | CMC5_002020 | DNA mismatch repair protein MutS. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.625 |
mutS-4 | rpsG | CMC5_084860 | CMC5_018640 | DNA mismatch repair protein MutS. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.474 |
mutS-4 | rpsU | CMC5_084860 | CMC5_031420 | DNA mismatch repair protein MutS. | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.436 |
mutS-4 | rsmG | CMC5_084860 | CMC5_010620 | DNA mismatch repair protein MutS. | Uncharacterized protein; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.441 |
polA | mutS-4 | CMC5_003550 | CMC5_084860 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | DNA mismatch repair protein MutS. | 0.469 |
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