STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsbPPhosphoserine phosphatase RsbP. (555 aa)    
Predicted Functional Partners:
rsbV
Anti-sigma-B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 0.964
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.921
rsbW
Serine-protein kinase RsbW.
 
 0.820
flgJ
Peptidoglycan hydrolase FlgJ.
   
    0.787
KXG78958.1
Hypothetical protein.
 
     0.727
rsbT
Serine/threonine-protein kinase RsbT.
  
 0.726
sigF_1
RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family.
 
 
 0.703
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
 0.703
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
 
 
  0.700
KXG76126.1
Hypothetical protein.
  
 0.680
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.