STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potBSpermidine/putrescine transport system permease protein PotB. (278 aa)    
Predicted Functional Partners:
potD
Spermidine/putrescine-binding periplasmic protein.
 
 0.998
potA_1
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 0.997
ydcV
Inner membrane ABC transporter permease protein YdcV.
 
0.997
potA_2
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 0.970
phnV
Putative 2-aminoethylphosphonate transport system permease protein PhnV.
 
 0.915
KXG73869.1
Hypothetical protein.
    
  0.682
sugC_2
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
  
 0.628
sugC_1
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
  
 0.618
yfkN
Trifunctional nucleotide phosphoesterase protein YfkN.
  
    0.452
ycjP_2
Inner membrane ABC transporter permease protein YcjP.
  
 
  0.432
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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