STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpASn-glycerol-3-phosphate transport system permease protein UgpA. (288 aa)    
Predicted Functional Partners:
araQ_1
L-arabinose transport system permease protein AraQ.
 0.995
ycjP_1
Inner membrane ABC transporter permease protein YcjP.
 0.993
sugC_1
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.992
sugC_2
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.986
msmE
Multiple sugar-binding protein.
 
 0.984
malE_1
Maltose-binding periplasmic protein.
 0.982
araQ_2
L-arabinose transport system permease protein AraQ.
 0.980
malF
Maltose transport system permease protein MalF.
 
0.944
ycjP_2
Inner membrane ABC transporter permease protein YcjP.
0.870
malE_2
Maltose-binding periplasmic protein.
 
 0.867
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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