STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snaCNADH:riboflavin 5'-phosphate oxidoreductase. (166 aa)    
Predicted Functional Partners:
KXG77904.1
Hypothetical protein.
       0.773
KXG77906.1
Hypothetical protein.
       0.558
KXG77903.1
Hypothetical protein.
       0.531
bcd
Acyl-CoA dehydrogenase, short-chain specific.
 
 
 0.510
KXG77907.1
Hypothetical protein.
       0.507
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.503
por_1
Pyruvate synthase.
    
  0.468
por_2
Pyruvate synthase.
    
  0.468
KXG76429.1
Hypothetical protein.
  
 
 0.453
KXG74285.1
Hypothetical protein.
 
 
  0.409
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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