STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tuaDUDP-glucose 6-dehydrogenase TuaD. (147 aa)    
Predicted Functional Partners:
wbpA_1
UDP-N-acetyl-D-glucosamine 6-dehydrogenase.
     0.994
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
 
 0.824
mnaA
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.770
wbpA_2
UDP-N-acetyl-D-glucosamine 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
     0.757
pgdA_1
Peptidoglycan-N-acetylglucosamine deacetylase.
 
    0.749
pgaC
Poly-beta-1,6-N-acetyl-D-glucosamine synthase.
 
     0.659
wbpA_3
UDP-N-acetyl-D-glucosamine 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
     0.616
pgaB
Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase.
 
    0.579
rffG
dTDP-glucose 4,6-dehydratase 2; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.558
ydhD_2
Putative sporulation-specific glycosylase YdhD.
 
     0.491
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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