STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjlDNADH dehydrogenase-like protein YjlD. (608 aa)    
Predicted Functional Partners:
hndC_1
NADP-reducing hydrogenase subunit HndC.
     
 0.908
hndC_4
NADP-reducing hydrogenase subunit HndC.
     
 0.908
KXG77055.1
Hypothetical protein.
 
  
 0.886
hepT_2
Heptaprenyl diphosphate synthase component 2; Belongs to the FPP/GGPP synthase family.
 
  
 0.853
sfrB
NADPH-Fe(3+) oxidoreductase subunit beta.
  
 
 0.852
nox
NADH oxidase.
  
 
0.818
rsxB
Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
   
 
 0.770
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
 
 0.726
hndC_3
NADP-reducing hydrogenase subunit HndC.
     
 0.707
apbE
FAD:protein FMN transferase; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
   
 0.671
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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