STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appA_1Oligopeptide-binding protein AppA. (541 aa)    
Predicted Functional Partners:
gsiD_1
Glutathione transport system permease protein GsiD.
 0.943
dppB
Dipeptide transport system permease protein DppB.
 0.933
gsiD_2
Glutathione transport system permease protein GsiD.
 0.927
gsiC
Glutathione transport system permease protein GsiC.
 0.922
oppC
Oligopeptide transport system permease protein OppC.
 0.898
oppB
Oligopeptide transport system permease protein OppB.
 0.871
oppA
Oligopeptide-binding protein OppA.
 
 
0.779
por_1
Pyruvate synthase.
  
    0.774
por_2
Pyruvate synthase.
  
    0.774
oppF_2
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 0.754
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.