STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigLECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)    
Predicted Functional Partners:
KXG77108.1
Hypothetical protein.
 
    0.948
rsiW
Anti-sigma-W factor RsiW.
  
 
 0.694
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.665
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.649
cheR
Chemotaxis protein methyltransferase.
    
   0.615
sigW_2
ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.608
sigW_3
ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.594
KXG77107.1
Hypothetical protein.
       0.527
KXG73752.1
Hypothetical protein.
  
     0.520
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.516
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.