STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdB_1Transcriptional regulatory protein YpdB. (253 aa)    
Predicted Functional Partners:
ypdA_1
Sensor histidine kinase YpdA.
 0.989
ypdA_2
Sensor histidine kinase YpdA.
 
 0.882
ypdB_3
Transcriptional regulatory protein YpdB.
  
  
 
0.691
KXG77201.1
Hypothetical protein.
       0.578
KXG77202.1
Hypothetical protein.
       0.578
cstA_1
Carbon starvation protein A.
 
     0.555
dcuS_3
Sensor histidine kinase DcuS.
 
 
  0.503
citS
Sensor protein CitS.
  
 
  0.450
dpiB_1
Sensor histidine kinase DpiB.
  
 
  0.400
dcuS_1
Sensor histidine kinase DcuS.
  
 
  0.400
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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