STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytfJPutative spore protein YtfJ. (149 aa)    
Predicted Functional Partners:
KXG76835.1
Hypothetical protein.
 
    0.920
ylbJ_1
Sporulation integral membrane protein YlbJ.
  
    0.742
sigF_2
RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.723
spoIIIAE
Stage III sporulation protein AE.
  
     0.722
yunB
Sporulation protein YunB.
  
   
 0.718
tepA
Translocation-enhancing protein TepA.
  
    0.696
ypeB_1
Sporulation protein YpeB.
  
     0.683
spoIVB
SpoIVB peptidase.
  
    0.666
KXG76197.1
Hypothetical protein.
  
     0.664
ypeB_2
Sporulation protein YpeB.
  
     0.663
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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