STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhcNLipoprotein YhcN. (178 aa)    
Predicted Functional Partners:
KXG73913.1
Hypothetical protein.
  
     0.694
KXG76817.1
Hypothetical protein.
  
     0.639
gerAC_1
Spore germination protein A3.
  
     0.621
KXG74607.1
Hypothetical protein.
  
     0.591
yunB
Sporulation protein YunB.
  
     0.587
KXG73964.1
Hypothetical protein.
  
     0.569
KXG78928.1
Hypothetical protein.
  
     0.522
ypeB_2
Sporulation protein YpeB.
  
    0.520
KXG74190.1
Hypothetical protein.
  
     0.497
yndE_1
Spore germination protein YndE.
  
     0.491
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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