STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yndE_1Spore germination protein YndE. (368 aa)    
Predicted Functional Partners:
gerAC_1
Spore germination protein A3.
  
 0.985
gerBA_1
Spore germination protein B1.
 
  
 0.959
KXG76197.1
Hypothetical protein.
 
     0.845
gerBA_2
Spore germination protein B1.
 
  
 0.806
ypeB_2
Sporulation protein YpeB.
 
     0.803
gerBC_2
Spore germination protein B3.
 
  
 0.773
gerAA
Spore germination protein A1.
 
  
 0.753
KXG76193.1
Hypothetical protein.
       0.748
KXG76792.1
Hypothetical protein.
  
     0.739
gerAC_2
Spore germination protein A3.
 
  
 0.737
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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