STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sleB_2Spore cortex-lytic enzyme. (235 aa)    
Predicted Functional Partners:
ypeB_2
Sporulation protein YpeB.
 
  
 0.953
ypeB_1
Sporulation protein YpeB.
 
  
 0.840
KXG76200.1
Hypothetical protein.
       0.700
KXG76197.1
Hypothetical protein.
 
   
 0.634
gerBC_1
Spore germination protein B3.
  
    0.586
cwlJ
Cell wall hydrolase CwlJ.
  
   
 0.570
gerBC_2
Spore germination protein B3.
  
    0.531
sleB_4
Spore cortex-lytic enzyme.
  
   
 0.530
ytfJ
Putative spore protein YtfJ.
  
    0.528
gerAC_1
Spore germination protein A3.
 
    0.513
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.