STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kce_23-keto-5-aminohexanoate cleavage enzyme. (271 aa)    
Predicted Functional Partners:
kal
3-aminobutyryl-CoA ammonia lyase.
  
  0.940
kdd
L-erythro-3,5-diaminohexanoate dehydrogenase.
 
  
  0.867
atoD
Acetate CoA-transferase subunit alpha.
    
 0.834
ctfB
Butyrate--acetoacetate CoA-transferase subunit B.
    
  0.827
KXG76211.1
L-beta-lysine 5,6-aminomutase beta subunit.
 
     0.655
KXG76252.1
Putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.655
kamD
D-lysine 5,6-aminomutase alpha subunit.
 
     0.654
KXG76208.1
Hypothetical protein.
 
     0.510
kynB_1
Kynurenine formamidase.
  
    0.444
kynB_2
Kynurenine formamidase.
  
    0.444
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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