STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerBC_2Spore germination protein B3. (389 aa)    
Predicted Functional Partners:
gerBA_2
Spore germination protein B1.
  
 0.956
yndE_3
Spore germination protein YndE.
  
 0.896
yndE_2
Spore germination protein YndE.
 
  
 0.867
gerBA_1
Spore germination protein B1.
  
 0.783
KXG74737.1
Hypothetical protein.
       0.780
yndE_1
Spore germination protein YndE.
 
  
 0.773
gerAA
Spore germination protein A1.
  
 0.764
yndE_4
Spore germination protein YndE.
 
  
 0.742
ypeB_2
Sporulation protein YpeB.
 
     0.721
spoIIM
Stage II sporulation protein M.
  
     0.709
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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