STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfG_9Cyclic di-GMP phosphodiesterase response regulator RpfG. (402 aa)    
Predicted Functional Partners:
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
 
0.995
cph2
Phytochrome-like protein cph2.
 
0.991
cheW_3
Chemotaxis protein CheW.
  
 0.987
rpfG_3
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
0.985
ylaB
Putative cyclic-di-GMP phosphodiesterase YlaB.
 0.984
tmoS
Sensor histidine kinase TmoS.
 
 0.982
dosC
Diguanylate cyclase DosC.
 
0.972
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
0.970
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
 
0.970
pleD
Response regulator PleD.
 
0.966
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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