STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nasD_2Nitrite reductase [NAD(P)H]; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (221 aa)    
Predicted Functional Partners:
rd
Rubredoxin.
  
 0.945
nox
NADH oxidase.
   
 0.944
por_1
Pyruvate synthase.
    
 0.889
por_2
Pyruvate synthase.
    
 0.889
nasF
Uroporphyrinogen-III C-methyltransferase.
  
 0.875
hcp_1
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
 
 0.631
hcp_2
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
 
 0.631
ynfF
Putative dimethyl sulfoxide reductase chain YnfF; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.629
rpfG_3
Cyclic di-GMP phosphodiesterase response regulator RpfG.
     
 0.618
cooS1
Carbon monoxide dehydrogenase 1.
  
 
 0.598
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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