STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfG_11Cyclic di-GMP phosphodiesterase response regulator RpfG. (352 aa)    
Predicted Functional Partners:
cph2
Phytochrome-like protein cph2.
 0.847
dosC
Diguanylate cyclase DosC.
  
  0.730
ycdT
Putative diguanylate cyclase YcdT.
   0.659
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
  
 0.630
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
     0.591
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.578
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
 
     0.573
pleD
Response regulator PleD.
 
 
 0.554
KXG74224.1
Hypothetical protein.
       0.509
ylaB
Putative cyclic-di-GMP phosphodiesterase YlaB.
  
  
 0.447
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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