STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soj_2Sporulation initiation inhibitor protein Soj. (257 aa)    
Predicted Functional Partners:
parB
Putative chromosome-partitioning protein ParB; Belongs to the ParB family.
 
 0.997
noc
Nucleoid occlusion protein; Belongs to the ParB family.
 
 0.959
spo0C
Chromosome-partitioning protein Spo0J; Belongs to the ParB family.
 
 0.826
KXG75342.1
Hypothetical protein; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.669
yhdJ_1
DNA adenine methyltransferase YhdJ; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.669
yhdJ_2
DNA adenine methyltransferase YhdJ; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.669
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.653
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.586
yidC
Membrane protein insertase YidC.
 
   
 0.573
rsmG
Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.550
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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