STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnVPutative 2-aminoethylphosphonate transport system permease protein PhnV. (267 aa)    
Predicted Functional Partners:
ydcU
Inner membrane ABC transporter permease protein YdcU.
 
 0.998
potA_2
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
 
 0.976
KXG73869.1
Hypothetical protein.
 
  
  0.974
potD
Spermidine/putrescine-binding periplasmic protein.
 
 
 0.948
potB
Spermidine/putrescine transport system permease protein PotB.
 
 0.915
potA_1
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.895
KXG73863.1
Hypothetical protein.
 
     0.873
rihA
Pyrimidine-specific ribonucleoside hydrolase RihA.
 
     0.832
KXG74035.1
Hypothetical protein.
 
     0.765
KXG73864.1
Hypothetical protein.
 
     0.735
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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