STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufS_2Cysteine desulfurase SufS. (447 aa)    
Predicted Functional Partners:
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
  
 0.963
ttcA
tRNA 2-thiocytidine biosynthesis protein TtcA; Belongs to the TtcA family.
 
      0.899
KXG75869.1
Hypothetical protein.
    
   0.824
trxB_1
Thioredoxin reductase.
   
 
  0.677
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.668
por_1
Pyruvate synthase.
  
 
 0.647
por_2
Pyruvate synthase.
  
 
 0.647
metC
Cystathionine beta-lyase.
     
 0.641
KXG73875.1
Hypothetical protein.
       0.471
KXG74839.1
Hypothetical protein.
 
  
  0.468
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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