STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpAPenicillin-binding protein A. (468 aa)    
Predicted Functional Partners:
rodA
Putative FtsW-like protein; Belongs to the SEDS family.
 
 0.998
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.988
ftsW
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.982
fhaB
FHA domain-containing protein FhaB.
 
   
 0.944
divIB
Cell division protein DivIB; Essential cell division protein.
  
 
 0.811
cphA
Cyanophycin synthetase; Belongs to the MurCDEF family.
 
  
 0.790
mrcA
Penicillin-binding protein 1A.
 
 
0.760
mrdA
Penicillin-binding protein 2.
  
  
0.722
mreC
Cell shape-determining protein MreC.
 
 
 0.714
fabI
Enoyl-[acyl-carrier-protein] reductase [NADH] FabI.
       0.678
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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