Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KXG76896.1 | KXG76898.1 | AN618_13790 | AN618_13810 | Hypothetical protein. | Hypothetical protein. | 0.956 |
KXG76896.1 | KXG78789.1 | AN618_13790 | AN618_01270 | Hypothetical protein. | Hypothetical protein. | 0.426 |
KXG76896.1 | cpdA | AN618_13790 | AN618_13820 | Hypothetical protein. | 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA. | 0.999 |
KXG76896.1 | dnaN_1 | AN618_13790 | AN618_16140 | Hypothetical protein. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.623 |
KXG76896.1 | polA | AN618_13790 | AN618_01960 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.999 |
KXG76896.1 | recA | AN618_13790 | AN618_13830 | Hypothetical protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.959 |
KXG76898.1 | KXG76896.1 | AN618_13810 | AN618_13790 | Hypothetical protein. | Hypothetical protein. | 0.956 |
KXG76898.1 | KXG78789.1 | AN618_13810 | AN618_01270 | Hypothetical protein. | Hypothetical protein. | 0.426 |
KXG76898.1 | cpdA | AN618_13810 | AN618_13820 | Hypothetical protein. | 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA. | 0.999 |
KXG76898.1 | dnaN_1 | AN618_13810 | AN618_16140 | Hypothetical protein. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.623 |
KXG76898.1 | polA | AN618_13810 | AN618_01960 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.999 |
KXG76898.1 | recA | AN618_13810 | AN618_13830 | Hypothetical protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.963 |
KXG78789.1 | KXG76896.1 | AN618_01270 | AN618_13790 | Hypothetical protein. | Hypothetical protein. | 0.426 |
KXG78789.1 | KXG76898.1 | AN618_01270 | AN618_13810 | Hypothetical protein. | Hypothetical protein. | 0.426 |
KXG78789.1 | cpdA | AN618_01270 | AN618_13820 | Hypothetical protein. | 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA. | 0.681 |
KXG78789.1 | dnaN_1 | AN618_01270 | AN618_16140 | Hypothetical protein. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.970 |
KXG78789.1 | polA | AN618_01270 | AN618_01960 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.999 |
KXG78789.1 | recA | AN618_01270 | AN618_13830 | Hypothetical protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.944 |
KXG78789.1 | srmB | AN618_01270 | AN618_01380 | Hypothetical protein. | ATP-dependent RNA helicase SrmB. | 0.988 |
cpdA | KXG76896.1 | AN618_13820 | AN618_13790 | 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA. | Hypothetical protein. | 0.999 |
page 1 of 4