STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpA_1Methylmalonyl-CoA mutase. (133 aa)    
Predicted Functional Partners:
lly
4-hydroxyphenylpyruvate dioxygenase.
  
 0.999
scpA_2
Methylmalonyl-CoA mutase.
 0.999
argK
Putative GTPase ArgK.
  
 0.997
cfiA
2-oxoglutarate carboxylase large subunit.
    
 0.915
KXG76889.1
Hypothetical protein.
    
 0.897
korA_2
2-oxoglutarate oxidoreductase subunit KorA.
    
 0.897
korB_2
2-oxoglutarate oxidoreductase subunit KorB.
 
  
 0.869
sucB
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex.
   
 
 0.810
pckA
Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
    
 0.799
KXG76883.1
Methylmalonyl-CoA carboxyltransferase 12S subunit.
  
  
 0.785
Your Current Organism:
Fervidicola ferrireducens
NCBI taxonomy Id: 520764
Other names: DSM 21121, F. ferrireducens, Fervidicola ferrireducens Ogg and Patel 2009, JCM 15106, KCTC 5610, Thermoanaerobacteriaceae bacterium Y170, strain Y170
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