STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spo0C_2Chromosome-partitioning protein Spo0J; Belongs to the ParB family. (353 aa)    
Predicted Functional Partners:
soj
Sporulation initiation inhibitor protein Soj.
 
 
 0.957
rpsA_1
30S ribosomal protein S1.
 
    0.781
KXG75500.1
Hypothetical protein.
       0.773
rsmG
Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.675
spoIIIE
DNA translocase SpoIIIE.
  
  
 0.613
KXG75498.1
Hypothetical protein.
 
     0.600
KXG75499.1
Hypothetical protein.
       0.574
KXG75503.1
Hypothetical protein.
       0.556
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
  
 0.527
int-tn
Transposase from transposon Tn916; Belongs to the 'phage' integrase family.
  
  
 0.479
Your Current Organism:
Fervidicola ferrireducens
NCBI taxonomy Id: 520764
Other names: DSM 21121, F. ferrireducens, Fervidicola ferrireducens Ogg and Patel 2009, JCM 15106, KCTC 5610, Thermoanaerobacteriaceae bacterium Y170, strain Y170
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.