STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacF_1D-alanyl-D-alanine carboxypeptidase DacF; Belongs to the peptidase S11 family. (403 aa)    
Predicted Functional Partners:
dacF_2
D-alanyl-D-alanine carboxypeptidase DacF; Belongs to the peptidase S11 family.
 
  
 
0.882
pbpF
Penicillin-binding protein 1F.
   
 
 0.879
dacB
D-alanyl-D-alanine carboxypeptidase DacB; Belongs to the peptidase S11 family.
  
  
 
0.877
spoVD
Stage V sporulation protein D.
 
 0.828
spmB
Spore maturation protein B.
  
  
 0.548
spmA
Spore maturation protein A.
  
  
 0.533
KYO67774.1
Hypothetical protein.
       0.532
KYO67775.1
Hypothetical protein.
       0.532
KYO67776.1
Hypothetical protein.
       0.532
mrdA
Penicillin-binding protein 2.
 
 0.518
Your Current Organism:
Thermovenabulum gondwanense
NCBI taxonomy Id: 520767
Other names: DSM 21133, KCTC 5616, T. gondwanense, Thermovenabulum gondwanense Ogg et al. 2010 emend. Pradel et al. 2013, Thermovenabulum sp. R270, strain R270
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.