Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KYO66559.1 | zraR_5 | ATZ99_11870 | ATZ99_11880 | Hypothetical protein. | Transcriptional regulatory protein ZraR. | 0.505 |
glnG | rpoN | ATZ99_03560 | ATZ99_01630 | Nitrogen regulation protein NR(I). | RNA polymerase sigma-54 factor. | 0.846 |
glnG | ydaM | ATZ99_03560 | ATZ99_08500 | Nitrogen regulation protein NR(I). | Putative diguanylate cyclase YdaM. | 0.998 |
glnG | zraR_5 | ATZ99_03560 | ATZ99_11880 | Nitrogen regulation protein NR(I). | Transcriptional regulatory protein ZraR. | 0.747 |
rpoN | glnG | ATZ99_01630 | ATZ99_03560 | RNA polymerase sigma-54 factor. | Nitrogen regulation protein NR(I). | 0.846 |
rpoN | ydaM | ATZ99_01630 | ATZ99_08500 | RNA polymerase sigma-54 factor. | Putative diguanylate cyclase YdaM. | 0.598 |
rpoN | zraR_5 | ATZ99_01630 | ATZ99_11880 | RNA polymerase sigma-54 factor. | Transcriptional regulatory protein ZraR. | 0.812 |
ydaM | glnG | ATZ99_08500 | ATZ99_03560 | Putative diguanylate cyclase YdaM. | Nitrogen regulation protein NR(I). | 0.998 |
ydaM | rpoN | ATZ99_08500 | ATZ99_01630 | Putative diguanylate cyclase YdaM. | RNA polymerase sigma-54 factor. | 0.598 |
ydaM | zraR_5 | ATZ99_08500 | ATZ99_11880 | Putative diguanylate cyclase YdaM. | Transcriptional regulatory protein ZraR. | 0.536 |
zraR_5 | KYO66559.1 | ATZ99_11880 | ATZ99_11870 | Transcriptional regulatory protein ZraR. | Hypothetical protein. | 0.505 |
zraR_5 | glnG | ATZ99_11880 | ATZ99_03560 | Transcriptional regulatory protein ZraR. | Nitrogen regulation protein NR(I). | 0.747 |
zraR_5 | rpoN | ATZ99_11880 | ATZ99_01630 | Transcriptional regulatory protein ZraR. | RNA polymerase sigma-54 factor. | 0.812 |
zraR_5 | ydaM | ATZ99_11880 | ATZ99_08500 | Transcriptional regulatory protein ZraR. | Putative diguanylate cyclase YdaM. | 0.536 |