STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bofASigma-K factor-processing regulatory protein BofA. (88 aa)    
Predicted Functional Partners:
KYO66101.1
Hypothetical protein.
 
    0.878
KYO66092.1
Hypothetical protein.
 
     0.715
gerM_2
Spore germination protein GerM.
  
     0.692
spoIIM
Stage II sporulation protein M.
  
   
 0.674
minJ
Cell division topological determinant MinJ.
  
     0.645
KYO66967.1
Hypothetical protein.
  
     0.643
KYO65822.1
Hypothetical protein.
  
     0.639
yndE_1
Spore germination protein YndE.
  
     0.587
KYO66093.1
Hypothetical protein.
 
   
 0.557
ftsL
Hypothetical protein; Essential cell division protein; Belongs to the FtsL family.
  
     0.552
Your Current Organism:
Thermovenabulum gondwanense
NCBI taxonomy Id: 520767
Other names: DSM 21133, KCTC 5616, T. gondwanense, Thermovenabulum gondwanense Ogg et al. 2010 emend. Pradel et al. 2013, Thermovenabulum sp. R270, strain R270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.