STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yycG_2Sensor histidine kinase YycG. (584 aa)    
Predicted Functional Partners:
walR_2
Transcriptional regulatory protein WalR.
 0.997
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 0.994
glnG
Nitrogen regulation protein NR(I).
   
 0.984
srrA
Transcriptional regulatory protein SrrA.
 0.955
cheR
Chemotaxis protein methyltransferase.
   
  0.929
walR_1
Transcriptional regulatory protein WalR.
 0.909
ydaM
Putative diguanylate cyclase YdaM.
  
 0.783
KYO66156.1
Hypothetical protein.
 
  
 0.772
pleD
Response regulator PleD.
   
 0.768
KYO66155.1
Hypothetical protein.
 
  
 0.753
Your Current Organism:
Thermovenabulum gondwanense
NCBI taxonomy Id: 520767
Other names: DSM 21133, KCTC 5616, T. gondwanense, Thermovenabulum gondwanense Ogg et al. 2010 emend. Pradel et al. 2013, Thermovenabulum sp. R270, strain R270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.