STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnPPPhosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase. (273 aa)    
Predicted Functional Partners:
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
    
 0.902
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.716
rny
Ribonuclease Y; Endoribonuclease that initiates mRNA decay.
       0.622
KYO65740.1
Hypothetical protein.
       0.585
spoVS_2
Stage V sporulation protein S.
       0.567
KYO65145.1
Hypothetical protein.
 
     0.545
porC_2
Pyruvate synthase subunit PorC.
    
  0.517
korB_2
2-oxoglutarate oxidoreductase subunit KorB.
    
  0.516
korA_2
2-oxoglutarate oxidoreductase subunit KorA.
    
  0.516
KYO65737.1
Ferredoxin-2.
       0.511
Your Current Organism:
Thermovenabulum gondwanense
NCBI taxonomy Id: 520767
Other names: DSM 21133, KCTC 5616, T. gondwanense, Thermovenabulum gondwanense Ogg et al. 2010 emend. Pradel et al. 2013, Thermovenabulum sp. R270, strain R270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.