STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comFBComF operon protein 2. (90 aa)    
Predicted Functional Partners:
KYO64124.1
Hypothetical protein.
  
  
 0.887
KYO65833.1
Hypothetical protein.
 
     0.852
KYO65832.1
Hypothetical protein.
       0.777
KYO65836.1
Hypothetical protein.
  
    0.762
KYO65831.1
Hypothetical protein.
       0.705
KYO65835.1
Hypothetical protein.
       0.701
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
  
    0.696
KYO65837.1
Hypothetical protein.
  
    0.677
epsF
Type II secretion system protein F.
  
  
 0.659
ypdF
Aminopeptidase YpdF; Belongs to the peptidase M24B family.
       0.635
Your Current Organism:
Thermovenabulum gondwanense
NCBI taxonomy Id: 520767
Other names: DSM 21133, KCTC 5616, T. gondwanense, Thermovenabulum gondwanense Ogg et al. 2010 emend. Pradel et al. 2013, Thermovenabulum sp. R270, strain R270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.