STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsGType II secretion system protein G. (108 aa)    
Predicted Functional Partners:
epsE_2
Type II secretion system protein E.
 
 0.983
epsF
Type II secretion system protein F.
 
  
 0.976
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
  
 0.914
pilT
Twitching mobility protein.
 
   
 0.834
KYO65833.1
Hypothetical protein.
 
  
 0.700
KYO65145.1
Hypothetical protein.
  
  
 0.681
comFB
ComF operon protein 2.
  
    0.596
rimO
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
   
    0.580
KYO65843.1
Hypothetical protein.
       0.561
comEA
ComE operon protein 1.
  
  
 0.558
Your Current Organism:
Thermovenabulum gondwanense
NCBI taxonomy Id: 520767
Other names: DSM 21133, KCTC 5616, T. gondwanense, Thermovenabulum gondwanense Ogg et al. 2010 emend. Pradel et al. 2013, Thermovenabulum sp. R270, strain R270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.