STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYO65413.1Hypothetical protein. (328 aa)    
Predicted Functional Partners:
KYO65414.1
Hypothetical protein.
 
     0.961
hpdB
4-hydroxyphenylacetate decarboxylase large subunit.
  
  
 0.677
pflB
Formate acetyltransferase.
  
  
 0.677
KYO65747.1
RNA 2',3'-cyclic phosphodiesterase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
 
     0.563
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
       0.530
adh1
Long-chain-alcohol dehydrogenase 1.
  
  
 0.528
KYO65415.1
Putative cation efflux system protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.455
KYO65411.1
Hypothetical protein.
       0.407
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.403
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.400
Your Current Organism:
Thermovenabulum gondwanense
NCBI taxonomy Id: 520767
Other names: DSM 21133, KCTC 5616, T. gondwanense, Thermovenabulum gondwanense Ogg et al. 2010 emend. Pradel et al. 2013, Thermovenabulum sp. R270, strain R270
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