Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KYO65220.1 | aviRb | ATZ99_16620 | ATZ99_16690 | Hypothetical protein. | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.562 |
KYO65220.1 | mutS2 | ATZ99_16620 | ATZ99_16630 | Hypothetical protein. | Endonuclease MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.842 |
KYO65220.1 | pheS | ATZ99_16620 | ATZ99_16680 | Hypothetical protein. | Phenylalanine--tRNA ligase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.787 |
KYO65220.1 | pheT | ATZ99_16620 | ATZ99_16670 | Hypothetical protein. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.834 |
KYO65220.1 | polX_2 | ATZ99_16620 | ATZ99_16650 | Hypothetical protein. | DNA polymerase/3'-5' exonuclease PolX. | 0.733 |
KYO65220.1 | ydcP_2 | ATZ99_16620 | ATZ99_16640 | Hypothetical protein. | Putative protease YdcP. | 0.759 |
KYO65220.1 | zapA | ATZ99_16620 | ATZ99_16660 | Hypothetical protein. | Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | 0.815 |
ackA | ydcP_2 | ATZ99_10140 | ATZ99_16640 | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | Putative protease YdcP. | 0.451 |
aroB | pheT | ATZ99_15540 | ATZ99_16670 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.691 |
aroB | udk | ATZ99_15540 | ATZ99_21580 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | Uridine kinase. | 0.518 |
aroB | ydcP_2 | ATZ99_15540 | ATZ99_16640 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | Putative protease YdcP. | 0.426 |
aviRb | KYO65220.1 | ATZ99_16690 | ATZ99_16620 | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Hypothetical protein. | 0.562 |
aviRb | mutS2 | ATZ99_16690 | ATZ99_16630 | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Endonuclease MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.577 |
aviRb | pheS | ATZ99_16690 | ATZ99_16680 | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Phenylalanine--tRNA ligase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.628 |
aviRb | pheT | ATZ99_16690 | ATZ99_16670 | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.729 |
aviRb | polX_2 | ATZ99_16690 | ATZ99_16650 | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | DNA polymerase/3'-5' exonuclease PolX. | 0.492 |
aviRb | udk | ATZ99_16690 | ATZ99_21580 | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Uridine kinase. | 0.544 |
aviRb | ydcP_2 | ATZ99_16690 | ATZ99_16640 | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Putative protease YdcP. | 0.429 |
aviRb | zapA | ATZ99_16690 | ATZ99_16660 | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | 0.596 |
mutS2 | KYO65220.1 | ATZ99_16630 | ATZ99_16620 | Endonuclease MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | Hypothetical protein. | 0.842 |
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