STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYO64556.1Hypothetical protein. (58 aa)    
Predicted Functional Partners:
lon2
Lon protease 2.
  
     0.692
spoIIIAE
Stage III sporulation protein AE.
  
     0.689
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.662
KYO65826.1
Hypothetical protein.
  
     0.639
KYO64357.1
Hypothetical protein; Probably functions as a manganese efflux pump.
  
     0.637
KYO64555.1
Hypothetical protein.
       0.602
ylbJ
Sporulation integral membrane protein YlbJ.
  
     0.596
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
       0.582
KYO65824.1
Hypothetical protein.
  
     0.535
ytfJ
Putative spore protein YtfJ.
 
    0.520
Your Current Organism:
Thermovenabulum gondwanense
NCBI taxonomy Id: 520767
Other names: DSM 21133, KCTC 5616, T. gondwanense, Thermovenabulum gondwanense Ogg et al. 2010 emend. Pradel et al. 2013, Thermovenabulum sp. R270, strain R270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.