Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KYO64098.1 | KYO64099.1 | ATZ99_21290 | ATZ99_21300 | Hypothetical protein. | Hypothetical protein. | 0.461 |
KYO64098.1 | KYO65152.1 | ATZ99_21290 | ATZ99_17410 | Hypothetical protein. | Hypothetical protein. | 0.450 |
KYO64098.1 | KYO67775.1 | ATZ99_21290 | ATZ99_04150 | Hypothetical protein. | Hypothetical protein. | 0.450 |
KYO64098.1 | artP | ATZ99_21290 | ATZ99_21280 | Hypothetical protein. | Arginine-binding extracellular protein ArtP; Belongs to the bacterial solute-binding protein 3 family. | 0.515 |
KYO64098.1 | guaA | ATZ99_21290 | ATZ99_03010 | Hypothetical protein. | GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP. | 0.476 |
KYO64098.1 | ispH | ATZ99_21290 | ATZ99_19660 | Hypothetical protein. | Hypothetical protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.453 |
KYO64098.1 | nnr | ATZ99_21290 | ATZ99_08860 | Hypothetical protein. | Bifunctional NAD(P)H-hydrate repair enzyme Nnr; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to al [...] | 0.497 |
KYO64098.1 | pheT | ATZ99_21290 | ATZ99_16670 | Hypothetical protein. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.449 |
KYO64098.1 | pyk | ATZ99_21290 | ATZ99_04730 | Hypothetical protein. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.453 |
KYO64098.1 | topA | ATZ99_21290 | ATZ99_20360 | Hypothetical protein. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.585 |
KYO64099.1 | KYO64098.1 | ATZ99_21300 | ATZ99_21290 | Hypothetical protein. | Hypothetical protein. | 0.461 |
KYO65152.1 | KYO64098.1 | ATZ99_17410 | ATZ99_21290 | Hypothetical protein. | Hypothetical protein. | 0.450 |
KYO65152.1 | KYO67775.1 | ATZ99_17410 | ATZ99_04150 | Hypothetical protein. | Hypothetical protein. | 0.558 |
KYO65152.1 | ispH | ATZ99_17410 | ATZ99_19660 | Hypothetical protein. | Hypothetical protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.474 |
KYO67775.1 | KYO64098.1 | ATZ99_04150 | ATZ99_21290 | Hypothetical protein. | Hypothetical protein. | 0.450 |
KYO67775.1 | KYO65152.1 | ATZ99_04150 | ATZ99_17410 | Hypothetical protein. | Hypothetical protein. | 0.558 |
artP | KYO64098.1 | ATZ99_21280 | ATZ99_21290 | Arginine-binding extracellular protein ArtP; Belongs to the bacterial solute-binding protein 3 family. | Hypothetical protein. | 0.515 |
guaA | KYO64098.1 | ATZ99_03010 | ATZ99_21290 | GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP. | Hypothetical protein. | 0.476 |
guaA | ispH | ATZ99_03010 | ATZ99_19660 | GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP. | Hypothetical protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.847 |
guaA | pheT | ATZ99_03010 | ATZ99_16670 | GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.969 |
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