ALC53_14235 protein (Atta colombica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALC53_14235

Uncharacterized protein. (1327 aa)

Predicted Functional Partners:

ALC53_09764

0.997

ALC53_09116

0.996

ALC53_11264

0.995

ALC53_13692

0.995

ALC53_11294

0.994

ALC53_08173

0.993

ALC53_06380

0.993

ALC53_04815

0.993

ALC53_00572

0.993

ALC53_13677

0.992

Your Current Organism:

Atta colombica

NCBI taxonomy Id: 520822
Other names: A. colombica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC53_00572	ALC53_04815	A0A195BYM2	A0A195BK04	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup88.	0.978
ALC53_00572	ALC53_06380	A0A195BYM2	A0A195BFY3	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.	0.999
ALC53_00572	ALC53_08173	A0A195BYM2	A0A195BB08	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore protein.	0.997
ALC53_00572	ALC53_09764	A0A195BYM2	A0A195B6F3	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	E3 SUMO-protein ligase RanBP2.	0.999
ALC53_00572	ALC53_11264	A0A195BYM2	A0A151HZQ8	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	mRNA export factor.	0.973
ALC53_00572	ALC53_11294	A0A195BYM2	A0A195B240	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
ALC53_00572	ALC53_13677	A0A195BYM2	A0A195AUP7	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin_N domain-containing protein.	0.999
ALC53_00572	ALC53_13692	A0A195BYM2	A0A195AUR2	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup98-Nup96.	0.997
ALC53_00572	ALC53_14235	A0A195BYM2	A0A195ATE1	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.993
ALC53_04815	ALC53_00572	A0A195BK04	A0A195BYM2	Nuclear pore complex protein Nup88.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.978
ALC53_04815	ALC53_06380	A0A195BK04	A0A195BFY3	Nuclear pore complex protein Nup88.	Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.	0.974
ALC53_04815	ALC53_08173	A0A195BK04	A0A195BB08	Nuclear pore complex protein Nup88.	Nuclear pore protein.	0.973
ALC53_04815	ALC53_09116	A0A195BK04	A0A195B8P6	Nuclear pore complex protein Nup88.	Exportin-1.	0.933
ALC53_04815	ALC53_09764	A0A195BK04	A0A195B6F3	Nuclear pore complex protein Nup88.	E3 SUMO-protein ligase RanBP2.	0.997
ALC53_04815	ALC53_11264	A0A195BK04	A0A151HZQ8	Nuclear pore complex protein Nup88.	mRNA export factor.	0.794
ALC53_04815	ALC53_11294	A0A195BK04	A0A195B240	Nuclear pore complex protein Nup88.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.979
ALC53_04815	ALC53_13677	A0A195BK04	A0A195AUP7	Nuclear pore complex protein Nup88.	Nucleoporin_N domain-containing protein.	0.976
ALC53_04815	ALC53_13692	A0A195BK04	A0A195AUR2	Nuclear pore complex protein Nup88.	Nuclear pore complex protein Nup98-Nup96.	0.983
ALC53_04815	ALC53_14235	A0A195BK04	A0A195ATE1	Nuclear pore complex protein Nup88.	Uncharacterized protein.	0.993
ALC53_06380	ALC53_00572	A0A195BFY3	A0A195BYM2	Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999