STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC53_07374Unconventional prefoldin RPB5 interactor. (542 aa)    
Predicted Functional Partners:
ALC53_00830
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 
 0.957
ALC53_12487
Protein UXT like protein.
    
 
 0.952
ALC53_09682
Uncharacterized protein.
    
 
 0.949
ALC53_08187
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
    
 
 0.932
ALC53_07426
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
    
 
 0.921
ALC53_12226
PIH1 domain-containing protein 1.
    
 
 0.915
ALC53_06095
RNA polymerase II-associated protein 3.
    
 
 0.915
ALC53_02748
P53 and DNA damage-regulated protein 1.
    
 
 0.791
ALC53_02713
Calcineurin subunit B type 2.
    
 
 0.751
ALC53_00196
WD repeat-containing protein 92.
    
 
 0.751
Your Current Organism:
Atta colombica
NCBI taxonomy Id: 520822
Other names: A. colombica
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