STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC53_06115B-box type zinc finger protein ncl-1. (754 aa)    
Predicted Functional Partners:
ALC53_10484
Ubiquitin-40S ribosomal protein S27a.
    
 0.898
ALC53_06007
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.879
ALC53_03624
Polyubiquitin-A.
    
 0.861
ALC53_02043
Polyubiquitin-A.
    
 0.861
ALC53_11000
Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.849
ALC53_02846
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.766
ALC53_01534
Ubiquitin-60S ribosomal protein L40.
    
  0.759
ALC53_14103
Ubiquitin-conjugating enzyme E2 5A.
   
 0.734
ALC53_12752
Gamma-glutamylcyclotransferase.
    
 0.734
ALC53_05240
Protein argonaute-2; Belongs to the argonaute family.
    
 0.710
Your Current Organism:
Atta colombica
NCBI taxonomy Id: 520822
Other names: A. colombica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.