STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC53_05810Uncharacterized protein. (2100 aa)    
Predicted Functional Partners:
ALC53_05614
Pre-mRNA-processing-splicing factor 8.
   
 0.999
ALC53_12781
Tr-type G domain-containing protein.
   
 0.999
ALC53_13619
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.998
ALC53_10159
Splicing factor 3B subunit 3.
   
 
 0.997
ALC53_01055
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.997
ALC53_06712
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 0.995
ALC53_07100
Uncharacterized protein.
   
 0.995
ALC53_04689
U4/U6.U5 tri-snRNP-associated protein 1.
   
 0.995
ALC53_02597
U4/U6 small nuclear ribonucleoprotein Prp3.
    
 0.995
ALC53_06565
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.994
Your Current Organism:
Atta colombica
NCBI taxonomy Id: 520822
Other names: A. colombica
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