STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC53_03490Uncharacterized protein. (192 aa)    
Predicted Functional Partners:
ALC53_07479
tRNA methyltransferase 112 like protein.
   
 0.806
ALC53_02786
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.802
ALC53_09603
Uncharacterized protein.
    
 0.801
ALC53_08604
Bystin.
   
 0.770
ALC53_07181
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 0.770
ALC53_07487
Pre-rRNA-processing protein TSR1 like protein.
   
 0.761
ALC53_14135
28S ribosomal protein S5, mitochondrial; Belongs to the universal ribosomal protein uS5 family.
    
 0.752
ALC53_06458
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.752
ALC53_06358
40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
   
  0.745
ALC53_07722
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
  0.743
Your Current Organism:
Atta colombica
NCBI taxonomy Id: 520822
Other names: A. colombica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.