STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC53_00344Nucleolar pre-ribosomal-associated protein 1. (1958 aa)    
Predicted Functional Partners:
ALC53_14086
Protein RRP5 like protein.
   
 
 0.971
ALC53_04526
HEAT repeat-containing protein 1.
   
 
 0.945
ALC53_01956
ATP-dependent RNA helicase DDX24.
   
 
 0.930
ALC53_00838
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.925
ALC53_13714
Small subunit processome component 20 like protein.
   
  
 0.920
ALC53_08985
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.913
ALC53_03229
Periodic tryptophan protein 2 like protein.
   
  
 0.910
ALC53_10572
Cirhin.
   
    0.906
ALC53_06085
Putative ATP-dependent RNA helicase Dbp73D.
   
 
 0.905
ALC53_03357
Transducin beta-like protein 3; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
    0.891
Your Current Organism:
Atta colombica
NCBI taxonomy Id: 520822
Other names: A. colombica
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